University of Sussex
Browse
BarnettSeth_GCsubsample.pdf (1.07 MB)

Detectability of Granger causality for subsampled continuous-time neurophysiological processes

Download (1.07 MB)
journal contribution
posted on 2023-06-09, 03:50 authored by Lionel BarnettLionel Barnett, Anil SethAnil Seth
Background: Granger causality is well established within the neurosciences for inference of directed functional connectivity from neurophysiological data. These data usually consist of time series which subsample a continuous-time biophysiological process. While it is well known that subsampling can lead to imputation of spurious causal connections where none exist, less is known about the effects of subsampling on the ability to reliably detect causal connections which do exist. New Method: We present a theoretical analysis of the effects of subsampling on Granger-causal inference. Neurophysiological processes typically feature signal propagation delays on multiple time scales; accordingly, we base our analysis on a distributed-lag, continuous-time stochastic model, and consider Granger causality in continuous time at finite prediction horizons. Via exact analytical solutions, we identify relationships among sampling frequency, underlying causal time scales and detectability of causalities. Results: We reveal complex interactions between the time scale(s) of neural signal propagation and sampling frequency. We demonstrate that detectability decays exponentially as the sample time interval increases beyond causal delay times, identify detectability “black spots” and “sweet spots”, and show that downsampling may potentially improve detectability. We also demonstrate that the invariance of Granger causality under causal, invertible filtering fails at finite prediction horizons, with particular implications for inference of Granger causality from fMRI data. Comparison with Existing Method(s): Our analysis emphasises that sampling rates for causal analysis of neurophysiological time series should be informed by domain-specific time scales, and that state-space modelling should be preferred to purely autoregressive modelling. Conclusions: On the basis of a very general model that captures the structure of neurophysiological processes, we are able to help identify confounds, and other practical insights, for successful detection of causal connectivity from neurophysiological recordings.

History

Publication status

  • Published

File Version

  • Accepted version

Journal

Journal of Neuroscience Methods

ISSN

0165-0270

Publisher

Elsevier

Volume

275

Page range

93-121

Department affiliated with

  • Informatics Publications

Research groups affiliated with

  • Sackler Centre for Consciousness Science Publications

Full text available

  • Yes

Peer reviewed?

  • Yes

Legacy Posted Date

2016-11-01

First Open Access (FOA) Date

2017-11-06

First Compliant Deposit (FCD) Date

2016-11-01

Usage metrics

    University of Sussex (Publications)

    Categories

    No categories selected

    Exports

    RefWorks
    BibTeX
    Ref. manager
    Endnote
    DataCite
    NLM
    DC